Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| KIRC | rs145615521 | chr12:32917852 | A/AT | 1.51E-5 | 517 | 43.03 | 25.08 | 8.73 | KM Plot |
| KIRC | rs145655039 | chr6:130412176 | G/GTTCT | 1.65E-5 | 522 | 39.23 | 43.68 | 7.4 | KM Plot |
| KIRC | rs145932667 | chr2:67561700 | G/C | 4.17E-7 | 520 | 39.23 | 37.67 | 2.03 | KM Plot |
| KIRC | rs146026713 | chr12:85189085 | C/A | 3.67E-6 | 524 | 39.53 | 39.42 | 3.37 | KM Plot |
| KIRC | rs146160101 | chr6:20280878 | A/AG | 1.3E-8 | 518 | 9.02 | 36.1 | 43.68 | KM Plot |
| KIRC | rs1462056 | chr2:6628247 | C/T | 2.33E-5 | 527 | 10.97 | 44.67 | 38.98 | KM Plot |
| KIRC | rs147058029 | chr12:29426981 | TTTTTC/T | 4.43E-8 | 527 | 40.8 | 38.57 | 6.07 | KM Plot |
| KIRC | rs147066924 | chr11:34772837 | T/TTA | 1.46E-7 | 523 | 41.27 | 30.3 | 3.3 | KM Plot |
| KIRC | rs147652984 | chr2:2616615 | CATT/C | 3.79E-5 | 524 | 39.08 | 45.37 | 8.35 | KM Plot |
| KIRC | rs147730268 | chr12:123024476 | G/T | 7.23E-9 | 514 | 39.2 | 45.93 | 5.12 | KM Plot |
| KIRC | rs148600831 | chr7:7742416 | TTTG/T | 7.38E-5 | 525 | 38.98 | 47.58 | 5.47 | KM Plot |
| KIRC | rs148863150 | chr21:47960789 | G/A | 1.02E-5 | 523 | 39.17 | 40.6 | 6.87 | KM Plot |
| KIRC | rs149496013 | chr4:147777837 | TTTA/T | 1.91E-5 | 523 | 40 | 37.77 | 11.47 | KM Plot |
| KIRC | rs149563130 | chr6:50888821 | C/T | 5.08E-5 | 521 | 38.98 | 47.38 | 7.4 | KM Plot |
| KIRC | rs150329133 | chr21:47916823 | AC/A | 2.13E-5 | 521 | 39 | 44.3 | 6.87 | KM Plot |